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ngsxfem installing issues
4 years 1 month ago #2458
by schruste
Replied by schruste on topic ngsxfem installing issues
Hi,
it's a compatibility problem of the ngsxfem and ngsolve version. If you check for the ngsolve-submodules version you can see which ngsolve-version is compatible with the corresponding ngsxfem-version. We do not in general provide a day-to-day compatibility of our main branches. To clarify on the compatibility you can use the submodule information.
In your case: The ngsxfem-commit that you pulled is not compatible with the most recent ngsolve version (due to an only seemingly minor change in the core of ngsolve).
Anyhow, I updated ngsxfem now so that it should be compatible to the recent ngsolve, so updating ngsxfem may be sufficient for now.
Best,
Christoph
it's a compatibility problem of the ngsxfem and ngsolve version. If you check for the ngsolve-submodules version you can see which ngsolve-version is compatible with the corresponding ngsxfem-version. We do not in general provide a day-to-day compatibility of our main branches. To clarify on the compatibility you can use the submodule information.
In your case: The ngsxfem-commit that you pulled is not compatible with the most recent ngsolve version (due to an only seemingly minor change in the core of ngsolve).
Anyhow, I updated ngsxfem now so that it should be compatible to the recent ngsolve, so updating ngsxfem may be sufficient for now.
Best,
Christoph
4 years 1 month ago #2460
by Amad
Replied by Amad on topic ngsxfem installing issues
Hi Christoph,
Thank you for the quick response.
I updated NGSxfem and, when I tried to install it, I received the following message
My NGSolve was updated automatically for the new version NGSolve-6.2.2002. If better, how can I install an old version of NGSolve? Tell me how to install an old version and I will do it on my computer.
Thank you for your time.
Thank you for the quick response.
I updated NGSxfem and, when I tried to install it, I received the following message
Code:
[100%] Built target ngsxfem_py
Install the project...
-- Install configuration: ""
-- Installing: /usr/bin/share/ngsxfem/cutint/area_of_a_circle_quads.py
CMake Error at cutint/py_demos/cmake_install.cmake:41 (file):
file INSTALL cannot copy file
"/home/alan/ngsxfem/cutint/py_demos/area_of_a_circle_quads.py" to
"/usr/bin/share/ngsxfem/cutint/area_of_a_circle_quads.py".
Call Stack (most recent call first):
cutint/cmake_install.cmake:42 (include)
cmake_install.cmake:42 (include)
Makefile:73: recipe for target 'install' failed
make: *** [install] Error 1
My NGSolve was updated automatically for the new version NGSolve-6.2.2002. If better, how can I install an old version of NGSolve? Tell me how to install an old version and I will do it on my computer.
Thank you for your time.
4 years 1 month ago #2461
by schruste
Replied by schruste on topic ngsxfem installing issues
Hi again,
Not sure what is going wrong here. The build was complete, which is good. Installation, i.e. merely copying the files seems to go wrong. Do you have the rights to write to /usr/bin, i.e. are you calling with sudo? Otherwise, have you tried installing locally, instead?
Best,
Christoph
Not sure what is going wrong here. The build was complete, which is good. Installation, i.e. merely copying the files seems to go wrong. Do you have the rights to write to /usr/bin, i.e. are you calling with sudo? Otherwise, have you tried installing locally, instead?
Best,
Christoph
4 years 1 month ago #2462
by Amad
Replied by Amad on topic ngsxfem installing issues
Hi Christoph,
Using sudo it was possible to install
But when I ran the tests
Or running a simple tutorial example I received this message
Sorry to bother you with this.
Using sudo it was possible to install
Code:
sudo make install
[100%] Built target ngsxfem_py
Install the project...
-- Install configuration: ""
-- Installing: /usr/bin/share/ngsxfem/cutint/area_of_a_circle_quads.py
-- Installing: /usr/bin/share/ngsxfem/cutint/integrate_one_big_quad2D.py
-- Installing: /usr/bin/share/ngsxfem/cutint/integrate_one_big_quad3D.py
-- Installing: /usr/bin/lib/python3/dist-packages/xfem/ngsxfem_py.so
-- Set runtime path of "/usr/bin/lib/python3/dist-packages/xfem/ngsxfem_py.so" to "$ORIGIN/../../../netgen"
-- Installing: /usr/bin/lib/python3/dist-packages/xfem/__init__.py
-- Installing: /usr/bin/lib/python3/dist-packages/xfem/cutmg.py
-- Installing: /usr/bin/include/netgen/p1interpol.hpp
-- Installing: /usr/bin/include/netgen/xprolongation.hpp
-- Installing: /usr/bin/include/netgen/restrictedblf.hpp
-- Installing: /usr/bin/include/netgen/ngsxstd.hpp
-- Installing: /usr/bin/include/netgen/bitarraycf.hpp
-- Installing: /usr/bin/include/netgen/cutinfo.hpp
-- Installing: /usr/bin/include/netgen/ghostpenalty.hpp
-- Installing: /usr/bin/include/netgen/xFESpace.hpp
-- Installing: /usr/bin/include/netgen/sFESpace.hpp
-- Installing: /usr/bin/include/netgen/xfemdiffops.hpp
-- Installing: /usr/bin/include/netgen/xfiniteelement.hpp
-- Installing: /usr/bin/include/netgen/symboliccutbfi.hpp
-- Installing: /usr/bin/include/netgen/symboliccutlfi.hpp
-- Installing: /usr/bin/share/ngsxfem/cutfem.py
-- Installing: /usr/bin/share/ngsxfem/fictdom_dg_ghostpen.py
-- Installing: /usr/bin/share/ngsxfem/fictdom_ghostpen.py
-- Installing: /usr/bin/share/ngsxfem/fictdom_ghostpen_restrictedblf.py
-- Installing: /usr/bin/share/ngsxfem/moving_domain.py
-- Installing: /usr/bin/share/ngsxfem/nxfem.py
-- Installing: /usr/bin/share/ngsxfem/nxfem_higher_order.py
-- Installing: /usr/bin/share/ngsxfem/stokesxfem.py
-- Installing: /usr/bin/share/ngsxfem/traceconverg.py
-- Installing: /usr/bin/share/ngsxfem/tracefem.py
-- Installing: /usr/bin/share/ngsxfem/tracefem3d.py
-- Installing: /usr/bin/share/ngsxfem/xfespaces.py
-- Installing: /usr/bin/share/ngsxfem/mpi/mpi_nxfem.py
-- Installing: /usr/bin/include/netgen/shiftintegrators.hpp
-- Installing: /usr/bin/include/netgen/calcpointshift.hpp
-- Installing: /usr/bin/include/netgen/calcgeomerrors.hpp
-- Installing: /usr/bin/include/netgen/lsetrefine.hpp
-- Installing: /usr/bin/include/netgen/projshift.hpp
-- Installing: /usr/bin/include/netgen/shiftedevaluate.hpp
-- Installing: /usr/bin/lib/python3/dist-packages/xfem/lsetcurv.py
-- Installing: /usr/bin/share/ngsxfem/lsetcurv/integrate.py
-- Installing: /usr/bin/share/ngsxfem/lsetcurv/lsetgeoms.py
-- Installing: /usr/bin/share/ngsxfem/report/ngsxfem_report.py
-- Installing: /usr/bin/include/netgen/SpaceTimeFE.hpp
-- Installing: /usr/bin/include/netgen/SpaceTimeFESpace.hpp
-- Installing: /usr/bin/include/netgen/diffopDt.hpp
-- Installing: /usr/bin/include/netgen/timecf.hpp
-- Installing: /usr/bin/include/netgen/spacetime_vtk.hpp
-- Installing: /usr/bin/lib/python3/dist-packages/xfem/lset_spacetime.py
-- Installing: /usr/bin/share/ngsxfem/spaceP1_timeDGP1.py
But when I ran the tests
Code:
Running tests...
Test project /home/alan/ngsxfem/build
Start 1: cpu_usage
1/20 Test #1: cpu_usage ........................ Passed 0.19 sec
Start 2: py_tutorial_nxfem_lo
2/20 Test #2: py_tutorial_nxfem_lo .............***Failed 0.38 sec
Start 3: py_tutorial_cutfem_lo
3/20 Test #3: py_tutorial_cutfem_lo ............***Failed 0.39 sec
Start 4: py_tutorial_nxfem_ho
4/20 Test #4: py_tutorial_nxfem_ho .............***Failed 0.26 sec
Start 5: py_tutorial_tracefem
5/20 Test #5: py_tutorial_tracefem .............***Failed 0.38 sec
Start 6: py_tutorial_stokesxfem
6/20 Test #6: py_tutorial_stokesxfem ...........***Failed 0.26 sec
Start 7: py_tutorial_fictdom
7/20 Test #7: py_tutorial_fictdom ..............***Failed 0.39 sec
Start 8: py_tutorial_fictdom_dg
8/20 Test #8: py_tutorial_fictdom_dg ...........***Failed 0.39 sec
Start 9: pytests_xfes_ndof
9/20 Test #9: pytests_xfes_ndof ................***Failed 0.05 sec
Start 10: pytests_cutint
10/20 Test #10: pytests_cutint ...................***Failed 0.06 sec
Start 11: pytests_straightcutrule
11/20 Test #11: pytests_straightcutrule ..........***Failed 0.04 sec
Start 12: pytests_backupcutrule
12/20 Test #12: pytests_backupcutrule ............***Failed 0.03 sec
Start 13: pytests_intcurved
13/20 Test #13: pytests_intcurved ................***Failed 0.04 sec
Start 14: pytests_nxfem
14/20 Test #14: pytests_nxfem ....................***Failed 0.05 sec
Start 15: pytests_shifteval
15/20 Test #15: pytests_shifteval ................***Failed 0.05 sec
Start 16: pytests_quadchallenges
16/20 Test #16: pytests_quadchallenges ...........***Failed 0.03 sec
Start 17: pytests_num_nxfem
17/20 Test #17: pytests_num_nxfem ................***Failed 0.05 sec
Start 18: pytests_spacetimecutrule
18/20 Test #18: pytests_spacetimecutrule .........***Failed 0.05 sec
Start 19: pytests_spacetime_vtk
19/20 Test #19: pytests_spacetime_vtk ............***Failed 0.04 sec
Start 20: pytests_navier_stokes
20/20 Test #20: pytests_navier_stokes ............***Failed 0.05 sec
5% tests passed, 19 tests failed out of 20
Total Test time (real) = 3.18 sec
The following tests FAILED:
2 - py_tutorial_nxfem_lo (Failed)
3 - py_tutorial_cutfem_lo (Failed)
4 - py_tutorial_nxfem_ho (Failed)
5 - py_tutorial_tracefem (Failed)
6 - py_tutorial_stokesxfem (Failed)
7 - py_tutorial_fictdom (Failed)
8 - py_tutorial_fictdom_dg (Failed)
9 - pytests_xfes_ndof (Failed)
10 - pytests_cutint (Failed)
11 - pytests_straightcutrule (Failed)
12 - pytests_backupcutrule (Failed)
13 - pytests_intcurved (Failed)
14 - pytests_nxfem (Failed)
15 - pytests_shifteval (Failed)
16 - pytests_quadchallenges (Failed)
17 - pytests_num_nxfem (Failed)
18 - pytests_spacetimecutrule (Failed)
19 - pytests_spacetime_vtk (Failed)
20 - pytests_navier_stokes (Failed)
Errors while running CTest
Makefile:129: recipe for target 'test' failed
make: *** [test] Error 8
Or running a simple tutorial example I received this message
Code:
optfile ./ng.opt does not exist - using default values
togl-version : 2
OCC module loaded
loading ngsolve library
NGSolve-6.2.2002
Using Lapack
Including sparse direct solver UMFPACK
Running parallel using 8 thread(s)
importing NGSolve-6.2.2002
Traceback (most recent call last):
File "testBasics.py", line 10, in <module>
from xfem import *
ModuleNotFoundError: No module named 'xfem'
Sorry to bother you with this.
4 years 1 month ago #2463
by schruste
Replied by schruste on topic ngsxfem installing issues
Ok, the default install target seems to be wrong.
It seems that the CMAKE_INSTALL_PREFIX is one level to low. It seems to be /usr/bin where it should only be /usr .
First uninstall ngsxfem again by calling "sudo xargs rm < install_manifest.txt" from the build directory. Then, reconfigure with "cmake ... -DCMAKE_INSTALL_PREFIX=/usr" or (better) choose a different local directory.
Best,
Christoph
It seems that the CMAKE_INSTALL_PREFIX is one level to low. It seems to be /usr/bin where it should only be /usr .
First uninstall ngsxfem again by calling "sudo xargs rm < install_manifest.txt" from the build directory. Then, reconfigure with "cmake ... -DCMAKE_INSTALL_PREFIX=/usr" or (better) choose a different local directory.
Best,
Christoph
3 years 8 months ago #3002
by kaipeng
Replied by kaipeng on topic ngsxfem installing issues I also meet the same errors when I run make test
I also meet the same errors when I run make test
The following tests FAILED:
2 - py_tutorial_nxfem_lo (Failed)
3 - py_tutorial_cutfem_lo (Failed)
4 - py_tutorial_nxfem_ho (Failed)
5 - py_tutorial_tracefem (Failed)
6 - py_tutorial_stokesxfem (Failed)
7 - py_tutorial_fictdom (Failed)
8 - py_tutorial_fictdom_dg (Failed)
9 - pytests_xfes_ndof (Failed)
10 - pytests_cutint (Failed)
11 - pytests_straightcutrule (Failed)
12 - pytests_backupcutrule (Failed)
13 - pytests_intcurved (Failed)
14 - pytests_nxfem (Failed)
15 - pytests_shifteval (Failed)
16 - pytests_quadchallenges (Failed)
17 - pytests_num_nxfem (Failed)
18 - pytests_spacetimecutrule (Failed)
19 - pytests_spacetime_vtk (Failed)
20 - pytests_navier_stokes (Failed)
Errors while running CTest
Makefile:129: recipe for target 'test' failed
make: *** [test] Error 8
The following tests FAILED:
2 - py_tutorial_nxfem_lo (Failed)
3 - py_tutorial_cutfem_lo (Failed)
4 - py_tutorial_nxfem_ho (Failed)
5 - py_tutorial_tracefem (Failed)
6 - py_tutorial_stokesxfem (Failed)
7 - py_tutorial_fictdom (Failed)
8 - py_tutorial_fictdom_dg (Failed)
9 - pytests_xfes_ndof (Failed)
10 - pytests_cutint (Failed)
11 - pytests_straightcutrule (Failed)
12 - pytests_backupcutrule (Failed)
13 - pytests_intcurved (Failed)
14 - pytests_nxfem (Failed)
15 - pytests_shifteval (Failed)
16 - pytests_quadchallenges (Failed)
17 - pytests_num_nxfem (Failed)
18 - pytests_spacetimecutrule (Failed)
19 - pytests_spacetime_vtk (Failed)
20 - pytests_navier_stokes (Failed)
Errors while running CTest
Makefile:129: recipe for target 'test' failed
make: *** [test] Error 8
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