- Thank you received: 6
custer installation issue (again)
- Guosheng Fu
- Topic Author
- Offline
- Elite Member
Less
More
6 years 3 months ago #709
by Guosheng Fu
Replied by Guosheng Fu on topic custer installation issue (again)
In the cmake file, I used these two lines to locate zlib
-DZLIB_INCLUDE_DIR=/gpfs/runtime/opt/zlib/1.2.8/ \
-DZLIB_LIBRARY=/gpfs/runtime/opt/zlib/1.2.8/lib \
-DZLIB_INCLUDE_DIR=/gpfs/runtime/opt/zlib/1.2.8/ \
-DZLIB_LIBRARY=/gpfs/runtime/opt/zlib/1.2.8/lib \
6 years 3 months ago #710
by cwinters
Replied by cwinters on topic custer installation issue (again)
If you specify it that way, you have to set
And check if the "libz.so" is in this folder.
Did you try to set
I think this should find both, library and header.
Best,
Christoph
Code:
-DZLIB_LIBRARY=/gpfs/runtime/opt/zlib/1.2.8/lib/libz.so
Did you try to set
Code:
-DZLIB_INCLUDE_DIRS=/gpfs/runtime/opt/zlib/1.2.8/
Best,
Christoph
- Guosheng Fu
- Topic Author
- Offline
- Elite Member
Less
More
- Thank you received: 6
6 years 3 months ago #711
by Guosheng Fu
Replied by Guosheng Fu on topic custer installation issue (again)
Well,
DZLIB_INCLUDE_DIRS
is not recognized...
Now, I have a even worse issue while building netgen....
[ 26%] Built target visual
/tmp/ccV60kWH.s: Assembler messages:
/tmp/ccV60kWH.s:1100: Error: suffix or operands invalid for `vbroadcastsd'
make[8]: *** [libsrc/linalg/CMakeFiles/la.dir/bfgs.cpp.o] Error 1
[ 26%] Building CXX object libsrc/general/CMakeFiles/gen.dir/seti.cpp.o
[ 27%] Building CXX object libsrc/general/CMakeFiles/gen.dir/sort.cpp.o
/tmp/ccsdcFfI.s: Assembler messages:
/tmp/ccsdcFfI.s:896: Error: suffix or operands invalid for `vbroadcastsd'
/tmp/ccsdcFfI.s:1039: Error: suffix or operands invalid for `vbroadcastsd'
/tmp/ccsdcFfI.s:1504: Error: no such instruction: `vpbroadcastd %xmm0,%ymm0'
/tmp/ccsdcFfI.s:1505: Error: suffix or operands invalid for `vpaddd'
/tmp/ccsdcFfI.s:1510: Error: suffix or operands invalid for `vpaddd'
/tmp/ccsdcFfI.s:2813: Error: suffix or operands invalid for `vbroadcastsd'
/tmp/ccsdcFfI.s:3999: Error: suffix or operands invalid for `vbroadcastsd'
/tmp/ccsdcFfI.s:4462: Error: suffix or operands invalid for `vbroadcastsd'
make[8]: *** [libsrc/linalg/CMakeFiles/la.dir/densemat.cpp.o] Error 1
This didn't happen yesterday :<
DZLIB_INCLUDE_DIRS
is not recognized...
Now, I have a even worse issue while building netgen....
[ 26%] Built target visual
/tmp/ccV60kWH.s: Assembler messages:
/tmp/ccV60kWH.s:1100: Error: suffix or operands invalid for `vbroadcastsd'
make[8]: *** [libsrc/linalg/CMakeFiles/la.dir/bfgs.cpp.o] Error 1
[ 26%] Building CXX object libsrc/general/CMakeFiles/gen.dir/seti.cpp.o
[ 27%] Building CXX object libsrc/general/CMakeFiles/gen.dir/sort.cpp.o
/tmp/ccsdcFfI.s: Assembler messages:
/tmp/ccsdcFfI.s:896: Error: suffix or operands invalid for `vbroadcastsd'
/tmp/ccsdcFfI.s:1039: Error: suffix or operands invalid for `vbroadcastsd'
/tmp/ccsdcFfI.s:1504: Error: no such instruction: `vpbroadcastd %xmm0,%ymm0'
/tmp/ccsdcFfI.s:1505: Error: suffix or operands invalid for `vpaddd'
/tmp/ccsdcFfI.s:1510: Error: suffix or operands invalid for `vpaddd'
/tmp/ccsdcFfI.s:2813: Error: suffix or operands invalid for `vbroadcastsd'
/tmp/ccsdcFfI.s:3999: Error: suffix or operands invalid for `vbroadcastsd'
/tmp/ccsdcFfI.s:4462: Error: suffix or operands invalid for `vbroadcastsd'
make[8]: *** [libsrc/linalg/CMakeFiles/la.dir/densemat.cpp.o] Error 1
This didn't happen yesterday :<
- Guosheng Fu
- Topic Author
- Offline
- Elite Member
Less
More
- Thank you received: 6
6 years 3 months ago #712
by Guosheng Fu
Replied by Guosheng Fu on topic custer installation issue (again)
After deleting all the old files... now, the installation phase is working fine. It was the ZLIB issue...
However, it give me a segmentation fault when I tried
from ngsolve import *
However, it give me a segmentation fault when I tried
from ngsolve import *
- Guosheng Fu
- Topic Author
- Offline
- Elite Member
Less
More
- Thank you received: 6
6 years 3 months ago #713
by Guosheng Fu
Replied by Guosheng Fu on topic custer installation issue (again)
FYI, besides the seg. fault,
this is what I got when run
make test_ngsolve
3% tests passed, 28 tests failed out of 29
Label Time Summary:
accuracy = 0.26 sec (3 tests)
performance = 0.09 sec (1 test)
standard = 0.95 sec (11 tests)
Total Test time (real) = 3.79 sec
The following tests FAILED:
1 - assemble.py (Failed)
2 - bla.py (Failed)
3 - poisson.py (Failed)
4 - adaptive.py (Failed)
5 - cmagnet.py (Failed)
6 - mixed.py (Failed)
7 - hybrid_mixed.py (Failed)
8 - hybrid_dg.py (Failed)
9 - taskmanager.py (Failed)
10 - compound.py (Failed)
11 - pickling.py (Failed)
12 - d1_square.pde (Failed)
13 - d2_chip.pde (Failed)
14 - d3_helmholtz.pde (Failed)
15 - d4_cube.pde (Failed)
16 - d5_beam.pde (Failed)
17 - d6_shaft.pde (Failed)
18 - d7_coil.pde (Failed)
19 - d8_coilshield.pde (Failed)
20 - d9_hybridDG.pde (Failed)
21 - d10_DGdoubleglazing.pde (Failed)
22 - d11_chip_nitsche.pde (Failed)
23 - d4_cube_performance.pde (Failed)
24 - acc_poisson_circle.pde (Failed)
25 - acc_poisson_circle_HDG.pde (Failed)
26 - acc_poisson_circle_HDG_hodc.pde (Failed)
28 - test_ngscxx (Not Run)
29 - pytest (Failed)
Errors while running CTest
gmake[4]: *** [test] Error 8
make[3]: *** [CMakeFiles/test_ngsolve] Error 2
make[2]: *** [CMakeFiles/test_ngsolve.dir/all] Error 2
make[1]: *** [CMakeFiles/test_ngsolve.dir/rule] Error 2
make: *** [test_ngsolve] Error 2
this is what I got when run
make test_ngsolve
3% tests passed, 28 tests failed out of 29
Label Time Summary:
accuracy = 0.26 sec (3 tests)
performance = 0.09 sec (1 test)
standard = 0.95 sec (11 tests)
Total Test time (real) = 3.79 sec
The following tests FAILED:
1 - assemble.py (Failed)
2 - bla.py (Failed)
3 - poisson.py (Failed)
4 - adaptive.py (Failed)
5 - cmagnet.py (Failed)
6 - mixed.py (Failed)
7 - hybrid_mixed.py (Failed)
8 - hybrid_dg.py (Failed)
9 - taskmanager.py (Failed)
10 - compound.py (Failed)
11 - pickling.py (Failed)
12 - d1_square.pde (Failed)
13 - d2_chip.pde (Failed)
14 - d3_helmholtz.pde (Failed)
15 - d4_cube.pde (Failed)
16 - d5_beam.pde (Failed)
17 - d6_shaft.pde (Failed)
18 - d7_coil.pde (Failed)
19 - d8_coilshield.pde (Failed)
20 - d9_hybridDG.pde (Failed)
21 - d10_DGdoubleglazing.pde (Failed)
22 - d11_chip_nitsche.pde (Failed)
23 - d4_cube_performance.pde (Failed)
24 - acc_poisson_circle.pde (Failed)
25 - acc_poisson_circle_HDG.pde (Failed)
26 - acc_poisson_circle_HDG_hodc.pde (Failed)
28 - test_ngscxx (Not Run)
29 - pytest (Failed)
Errors while running CTest
gmake[4]: *** [test] Error 8
make[3]: *** [CMakeFiles/test_ngsolve] Error 2
make[2]: *** [CMakeFiles/test_ngsolve.dir/all] Error 2
make[1]: *** [CMakeFiles/test_ngsolve.dir/rule] Error 2
make: *** [test_ngsolve] Error 2
6 years 3 months ago #714
by joachim
Replied by joachim on topic custer installation issue (again)
Hi Guosheng,
not everything from the sequential version is expected to work in parallel, see this list of supported MPI functionality:
ngsolve.org/docu/latest/how_to/howto_parallel.html
Joachim
not everything from the sequential version is expected to work in parallel, see this list of supported MPI functionality:
ngsolve.org/docu/latest/how_to/howto_parallel.html
Joachim
Time to create page: 0.130 seconds