Error in compilation on Ubuntu 22.04
- arashgmn
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2 years 5 months ago - 2 years 5 months ago #4423
by arashgmn
Error in compilation on Ubuntu 22.04 was created by arashgmn
I'm trying to build ngsolve with MUMPS, MPI, and MKL on two 64-bit machines running Ubuntu 20.04 and 22.04 respectively. (I'm using virtual machine instances for now, in case it matters).
I managed to get things up and running on 20.04, but not on 22. Particularly, I can configure the make file with no error, but make raises a number of errors in ana_orderings_wrappers_m.F. Something like the following (lines:315:39):
Error: Rank mismatch between actual argument at (1) and actual argument at (2) (scalar and rank-1)
make[6]: *** [Makefile:381: ana_orderings_wrappers_m.o] Error 1
make[5]: *** [Makefile:20: c] Error 2
make[4]: *** [Makefile:40: mumps_lib] Error 2
make[3]: *** [Makefile:18: c] Error 2
make[2]: *** [CMakeFiles/project_mumps.dir/build.make:86: dependencies/src/project_mumps-stamp/project_mumps-build] Error 2
make[1]: *** [CMakeFiles/Makefile2:254: CMakeFiles/project_mumps.dir/all] Error 2
make: *** [Makefile:156: all] Error 2
These are my steps for installing ngsolve on Ubuntu 20.04:
1. Why isn't this procedure work in Ubuntu 22.04? It seems to me the code is not compiled. But unfortunately, my understanding of Fortran is next to nothing.
2. I had a painful experience with installing MPICH and openMP side by side, especially on a cluster, and I reckon that what I have done above is actually a bad practice. How can I avoid that?
4. I failed to installed with BLAS/LAPACK and that's why I switched to MKL. But is it necessary? Can I avoid these extra installations?
Thanks!
I managed to get things up and running on 20.04, but not on 22. Particularly, I can configure the make file with no error, but make raises a number of errors in ana_orderings_wrappers_m.F. Something like the following (lines:315:39):
Error: Rank mismatch between actual argument at (1) and actual argument at (2) (scalar and rank-1)
make[6]: *** [Makefile:381: ana_orderings_wrappers_m.o] Error 1
make[5]: *** [Makefile:20: c] Error 2
make[4]: *** [Makefile:40: mumps_lib] Error 2
make[3]: *** [Makefile:18: c] Error 2
make[2]: *** [CMakeFiles/project_mumps.dir/build.make:86: dependencies/src/project_mumps-stamp/project_mumps-build] Error 2
make[1]: *** [CMakeFiles/Makefile2:254: CMakeFiles/project_mumps.dir/all] Error 2
make: *** [Makefile:156: all] Error 2
These are my steps for installing ngsolve on Ubuntu 20.04:
- I installed the dependencies mentioned in the docs.
- In addition, I installed all MP implementations, as well as MKL as follows:
- sudo apt-get install openmpi-bin libopenmpi-dev mpich intel-mkl-full
- I added the installation locations to my path so that make can find these packages later (although, probably I could have given them as argument too)
- After a number of trials, turned out for running the example files I need to install mpi4python and mkl (in my python environment) which I did using pip3.
- python3 -m pip install mpi4py mkl
- And finally configured my makefile as follows:
-
Code:cmake -DCMAKE_INSTALL_PREFIX=${BASEDIR}/ngsolve-install -DUSE_MKL=ON -DMKL_INCLUDE_DIR=/usr/include/mkl -DMKL_STATIC=OFF -DMKL_SDL=OFF -DMKL_MULTI_THREADED=OFF -DUSE_MPI=ON -DUSE_OCC=ON -DUSE_MUMPS=ON -DBUILD_STUB_FILES=OFF ${BASEDIR}/ngsolve-src
-
1. Why isn't this procedure work in Ubuntu 22.04? It seems to me the code is not compiled. But unfortunately, my understanding of Fortran is next to nothing.
2. I had a painful experience with installing MPICH and openMP side by side, especially on a cluster, and I reckon that what I have done above is actually a bad practice. How can I avoid that?
4. I failed to installed with BLAS/LAPACK and that's why I switched to MKL. But is it necessary? Can I avoid these extra installations?
Thanks!
Last edit: 2 years 5 months ago by arashgmn.
- mgobrial
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2 years 1 month ago #4502
by mgobrial
Replied by mgobrial on topic Error in compilation on Ubuntu 22.04
Hi,
I had the same problems. Before the cmake, I tried his comman line:
export FFLAGS="-fallow-argument-mismatch"
but it did not help. Are there any new achievements?
Best, Mario
I had the same problems. Before the cmake, I tried his comman line:
export FFLAGS="-fallow-argument-mismatch"
but it did not help. Are there any new achievements?
Best, Mario
2 years 1 month ago #4516
by matthiash
Replied by matthiash on topic Error in compilation on Ubuntu 22.04
Hi,
I am also no Fortran expert. Since your problem is about building Mumps (the only dependency here with Fortran source code), I suggest to disable it first and fix all other issues (if any).
Concerning Mumps: Did you try different Fortran compilers/versions? Which one are you using?
Best,
Matthias
I am also no Fortran expert. Since your problem is about building Mumps (the only dependency here with Fortran source code), I suggest to disable it first and fix all other issues (if any).
Concerning Mumps: Did you try different Fortran compilers/versions? Which one are you using?
Best,
Matthias
2 years 1 month ago #4518
by JuliusZ
Replied by JuliusZ on topic Error in compilation on Ubuntu 22.04
This error can be fixed by the following patch:
diff --git a/cmake/external_projects/mumps.inc b/cmake/external_projects/mumps.inc
index effe76f54..6c77bc95b 100644
--- a/cmake/external_projects/mumps.inc
+++ b/cmake/external_projects/mumps.inc
@@ -32,7 +32,7 @@ CDEFS = -DAdd_
#Begin Optimized options
# uncomment -fopenmp in lines below to benefit from OpenMP
-OPTF = -O -fPIC -DALLOW_NON_INIT # -fopenmp
+OPTF = -O -fPIC -DALLOW_NON_INIT -fallow-argument-mismatch # -fopenmp
OPTL = -O -fPIC # -fopenmp
OPTC = -O -fPIC # -fopenmp
#End Optimized options
diff --git a/cmake/external_projects/mumps.inc b/cmake/external_projects/mumps.inc
index effe76f54..6c77bc95b 100644
--- a/cmake/external_projects/mumps.inc
+++ b/cmake/external_projects/mumps.inc
@@ -32,7 +32,7 @@ CDEFS = -DAdd_
#Begin Optimized options
# uncomment -fopenmp in lines below to benefit from OpenMP
-OPTF = -O -fPIC -DALLOW_NON_INIT # -fopenmp
+OPTF = -O -fPIC -DALLOW_NON_INIT -fallow-argument-mismatch # -fopenmp
OPTL = -O -fPIC # -fopenmp
OPTC = -O -fPIC # -fopenmp
#End Optimized options
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